分子模擬暨藥物設計實驗室

1. Bursulaya, B. D.; Jeon, J.; Yang, C.N.; Zichi, D. A.; Kim, H.J.
(1999) "A Truncated Adiabatic Basis-Set Approach to Solvent Electronic Structure Variations.” Simulation and Theory of Electrostatic Interactions in Solution, pp. 281–300.

2. Yang, C.N.; Klippenstein, S.J.
(1999) "Theory and Modeling of the Binding in Cationic Transition-Metal- Benzene Complexes” J. Phys. Chem. A, 103 (8), pp. 1094–1103. (SCI)

3. Ryzhov, V.; Yang, C.N.; Klippenstein, S.J.; Dunbar, R.C.
(2000) "Binding Energies of Chromium Cations with Fluorobenzenes from Radiactive Association Kinetics”. International Journal of Mass Spectrometry and Ion Processes, 185/186/187, 913–923.

4. Yang,C.N.; Kim, H.J.
(2000) "Dielectric Relaxation of Hot Water”, J. Chem. Phys. 113(15), pp. 6025–6028.

5. Bursulaya, B.D.; Jeon, J.; Yang, C.N.; Kim, H.J.
(2000) "On the Photoabsorption Spectroscopy of Water”. J. Phys. Chem. A, 104 (1), pp. 45–52. (SCI)

6. Gapeev, Alexei; Yang, C.N.; Klippenstein, Stephen J.; Dunbar, Robert C.
(2000) "Binding Energies of Gas-Phase Metal Ions with Pyrrole: Experimental and Quantum Chemical Results”. J. Phys. Chem. A, 104 (14), pp. 3246–3256.

7. Stephen J. Klippenstein.; Yang, C.N.
(2000) "Density Functional Theory Predictions for the Binding of Transition Metal Cations to π systems: from Acetylene to Coronene and Tribenzocyclyne”. International Journal of Mass Spectrometry 201, 253–267.

8. Yang, C.N.*(corresponding); Yang, C.B.
(2005) "DNA Solution of SAT Problem by a Modified Sticker Model”, BioSystems, 81, pp1–9. (NSC-91-2213-E-110-022)

9. Lin, C.H.; Cheng, S.P.; Yang, C.N.*(corresponding); Yang, C.B.
(2007) "Solving Satisfiability Problems Using a Novel Microarray-based DNA Computer”. BioSystems, 90, pp242–252. (NSC-91-2213-E-110-022)

10. Tseng, C.H., Chen, Y.L.; Lu, P.J.; Yang, C.N.; Tzeng, C.C.
(2008) "Synthesis and Antiproliferative Evaluation of Certain Indeno﹝1,2-c﹞quinoline Derivatives”, Bioorganic & Medicinal Chemistry 16, 3153–3162.

11. Chen, Y.L.; Lin, H.C.; Yang, C.N.; Lu, P.J.; Tzeng, C.C.
(2008) "Synthesis and Antiproliferative Evaluation of 4-Anilino-nmethoxyfuro﹝2,3-b﹞quinoline Derivatives (n = 6, 7)Part 5.” Chemistry & Biodiversity, 5, 2667–2670.

12. Yang, C.N.; Huang, K.S.; Yang, C.B.; Hsu, C.Y.
(2009) "Error-Tolerant Minimum Finding with DNA Computing.” The International Journal of Innovative Computing, Information and Control. 5, 10(A), 3045–3057.

13. Chang, C.Y.; Liau, H.H.; Lu, P.J.; Chen, H.L.; Yang, C.N.; Shaw, A.Y.
(2009) "Synthesis of 2-Styrylchromones as a Novel Class of Antiproliferative Agents Targeting Carcinoma Cells.” European Journal of Medicinal Chemistry, 44, 6, 2552–2562.

14. Chen, H.L.; Chang, C.Y.; Lee, H.T.; Lin, H.H.; Lu, H.H.; Lu, P.J.; Yang, C.N.; Shiau, C.W.; Shaw, A.Y.
(2009) "Synthesis and Pharmacological Exploitation of Clioquinol-Derived Copper-Binding Apoptosis Inducers Triggering Reactive Oxygen Species Generation and MAPK Pathway Activation .” Bioorganic & Medicinal Chemistry, 17, 7239–7247.

15. Howng, S.L.; Hwang, C.C.; Hsu, C.Y.; Hsu, M.Y.; Teng C.Y.; Chou C.H.; Lee, M.F.; Wu, C.H.; Chiou, S.J.; Lieu, A.S.; Loh, J.K.; Yang, C.N.; Lin, C.S.; Hong, Y.R.*
(2010) "Involvement of the Residues of GSKIP, AxinGID, and FRATtide in Their Binding with GSK3β to Unravel a Novel C-terminal Scaffold-binding Region.” Molecular Cell Biochemistry, 339 (1-2): 23–33.

16. Shaw, A.Y.; Chang, C.Y.; Hsu, M.Y.; Lu, P.J.; Yang,C.N.; Chen, H.L.; Lo, C.W.; Shiau, C.W.; Chern, M.K.
(2010) "Synthesis and structure-activity relationship study of 8-hydroxyquinoline-derived Mannich bases as anticancer agents.”European Journal of Medicinal Chemistry, 45, 2860–2867.

17. Shaw, A.Y.; Liau, H.H.; Lu, P.J.; Lee, C.H.; Yang,C.N.;Chen, J.Y.; Xu, Z.
(2010) "3,5-Diaryl-1H-pyrazole as a molecular scaffold for the synthesis of apoptosisinducing agents.”Bioorganic & Medicinal Chemistry, 18, 9, 3270–327.

18. Lu, C. M.; Chen, Y. L.; Chen, H.L.; Chen, C. A.; Lu, P. J.; Yang, C. N.; Tzeng, C.C.
(2010) "Synthesis and antiproliferative evaluation of certain indolo[3,2-c]quinoline derivatives.”Bioorganic & Medicinal Chemistry, 18, 1948–1957.

19. Tseng, C.H.; Tzeng, C.C.; Yang, C.L.; Lu, P.J.; Chen, H.L.; Li, H.Y.; Chuang, Y.C.; Yang, C.N.* (co-corresponding); Chen, Y.L.*
(2010) "Synthesis and antiproliferative evaluation of certain indeno[1,2-c]quinoline derivatives. Part 2" J. Med. Chem, 53, 6164–6179.

20. Hong, C.J.; Tsai, P. J.; Cheng, C.Y.; Chou, C.K.; Jheng, H. F.; Chuang, Y.C.; Yang, C.N.; Lin, Y.T.; Hsu, C.W.; Cheng, I.H.; Chen, S. Y.; Tsai, S.J.; Liou, Y. J.; Tsai, Y.S.
(2010) "ENU Mutagenesis Identifies Mice with Morbid Obesity and Severe Hyperinsulinemia Caused by a Novel Mutation in Leptin."PLos ONE, 5, 12, e15333.

21.Tang, X.N.; Lo, C.W.; Chuang, Y.C.; Chen, C.T.; Sun, Y.C.; Hong, Y.R.; Yang, C.N.*(corresponding)
(2011) "Prediction of the binding mode between GSK3ß and a peptide derived from GSKIP using molecular dynamics simulation." Biopolymers, 95, 7, 461–471. (Impact factor 2012: 2.879)

22.Chen, Y.W.; Chen, Y.L.; Tseng, C.H.; Liang, C.C.; Yang, C.N.; Yao, Y.C.; Lu, P.J.; Tzeng, C.C.
(2011) "Discovery of 4-Anilinofuro[2,3-b]quinoline Derivatives as Selective and Orally Active Compounds Against Non-small Cell Lung Cancers." Journal of Medicinal Chemistry, 54, 4446–4461. (Impact factor 2012: 5.614)

23.Chia-Ning Yang*(corresponding), Chun-Yu Hsu, Yu-Chung Chuang
(2012) "Molecular Beacon-Based Half Adder and Half Subtractor"Chemical Communications, 48, 112–114. (Impact factor 2012: 6.378)

24. Hsiu-Yu Wang, Liang-I Juo, Yuh-Te Lin, Michael Hsiao, Jen-Tai Lin, Chen-Hsun Tsai, Yu-Hao Tzeng, Yu-Chung Chuang, Nan-Shan Chang, Chia-Ning Yang* (co-corresponding), Pei-Jung Lu*
(2012) “WW Domain-Containing Oxidoreductase Promotes Neuronal Differentiation via Negative Regulation of Glycogen Synthase Kinase 3β” Accepted by Cell Death and Differentiation, 19(6):1049–59. (Impact factor 2012: 8.371)

25. Chih-Hua Tseng, Cherng-Chyi Tzeng, Pin-Keng Shih, Chia-Ning Yang, You-Chung Chuang, Shin-I Peng, Chang-Sheng Lin, Jih-Pyang Wang, Chih-Mei Cheng, Yeh-Long Chen*
(2012)“Identification of furo[3, 2:3,4]naphtho[1,2-d]imidazole derivatives as orally active and selective inhibitors of microsomal prostaglandin E2 synthase-1 (mPGES-1)” Molecular Diversity, 16(2):215–229. (Impact factor: 2.861)

26. Chen Lin, Pei-Jung Lu, Chia-Ning Yang, Christopher Hulme, Arthur Y. Shaw*
(2012) "Structure-activity relationship study of growth inhibitory 2-styrylchromones against carcinoma cells." Medicinal Chemistry Research, 22, 5, 2385–2394. (Impact factor 2012: 1.612)

27. Chi-Tai Yeh, Alexander T H Wu, Peter M H Chang, Kuan-Yu Chen, Chia-Ning Yang, Shuenn-Chen Yang, Chao-Chi Ho, Chun-Chi Chen, Yu-Lun Kuo, Pei-Ying Lee, Yu-Wen Liu, Chueh-Chuan Yen, Michael Hsiao, Pei-Jung Lu, Jin-Mei Lai, Liang-Shun Wang, Chih-Hsiung Wu, Jeng-Fong Chiou, Pan-Chyr Yang, and Chi-Ying F. Huang
(2012) Trifluoperazine, an Antipsychotic Agent, Inhibits Cancer Stem Cell Growth and Overcomes Drug Resistance of Lung Cancer. American Journal of Respiratory and Critical Care Medicine,186 (11):1180-8.(Impact factor 2011: 11.041)

28. Yu-Peng Liu, Hui-Ling Chen, Cherng-Chyi Tzeng,* Pei-Jung Lu, Yu-Cheng Li, Chih-Hua Tseng, Yeh-Long Chen, and Chia-Ning Yang* (co-corresponding)
(2013) TCH-1030 targeting on topoisomerase I induces S-phase arrest, DNA fragmentation, and cell death of breast cancer cells. Breast Cancer Research and Treatment, 138 (2):383–393. (Impact factor 2012: 4.469)

29. Ying-Hsin Chang, Jun-Yan Chen, Chiou-Yi Hor, Yu-Chung Chuang, Chang-Biau Yang, Chia-Ning Yang* (corresponding)
(2013) Computational Study of Estrogen Receptor-alpha Antagonist with Three-Dimensional Quantitative Structure-Activity Relationship, Support Vector Regression, and Linear Regression Methods, International Journal of Medicinal Chemistry, Volume 2013, Article ID 743139, 13 pages.

30. Hsin-Wen Chang, Fu-Sheng Chung, Chia-Ning Yang* (corresponding)
(2013) Molecular modeling of p38 alpha MAPK inhibitors through 3D-QSAR and molecular dynamics simulations. Journal of Chemical Information and Modeling, 53(7):1775–1786. (Impact factor 2012: 4.304)

31. Chia-Ning Yang* (corresponding), Yi-Li Chen, Hung-Yin Lin, Chun-Yu Hsu
(2013) An Optical Deoxyribonucleic Acid-based Half-subtractor. Chemical Communications, 49(78):8860–2. (Impact factor 2012: 6.378)

32. Chih-Hua Tseng, Cherng-Chyi Tzeng, Chiao-Li Yang, Pei-Jung Lu, Yu-Peng Liu, Hui-Ling Chen, Chien-Yu Chen, Chia-Ning Yang* (co-corresponding), and Yeh-Long Chen*
(2013) Discovery of indeno[1,2-c]quinoline derivatives as dual topoisomerases I/II inhibitors: Part 3, Molecular Diversity, 17:781–799. (Impact factor 2012: 2.861)

33. Shi-Yie Cheng, Neng-Lang Shih, Kuang-Yu Hou, Mang-Jye Ger, Chia-Ning Yang, Shang-Kewi Wang, Chang-Yih Duh.*
(2014) Kelsoenethiol and dikelsoenyl ether, two unique kelsoane-type sesquiterpenes, from the Formosan soft coral Nephthea erecta. Bioorganic & Medicinal Chemistry Letters 24, 473–475.

34. Shi-Yie Cheng, Neng-Lang Shih, Cheng-Ta Chuang, Shu-Fen Chiou, Chia-Ning Yang,Shang-Kwei Wang, Chang-Yih Duh.*
(2014) Sinugyrosanolide A, an unprecedented C-4 norcembranoid, from the Formosan soft coral Sinularia gyrosa. Bioorganic & Medicinal Chemistry Letters 24, 1562–1564.

35. Ru-Wei Lin, Chia-Ning Yang, ShengYu Ku, Cheng-Jung Ho, Shih-Bo Huang, Min-Chi Yang, Hsin-Wen Chang, Chun-Mao Lin, Jaulang Hwang, Yeh-Long Chen, Cherg-Chyi Tzeng,* Chihuei Wang*
(2014) CFS-1686 causes cell cycle arrest at intra-S phase by interference of interaction of topoisomerase 1 with DNA. PLoS ONE 9(12): e113832

36. Yu-Chung Chuang, Ching-Hsun Chang, Jen-Tai Linand Chia-Ning Yang* (Corresponding)
(2015) Molecular modelling studies on SIRT2 inhibitors using 3D-QSAR and molecular dynamics simulations. Molecular Biosystems, 11, 723–733 (Impact Factor 2013: 3.183)

37. Cheng-Han Lin, Hao-Yi Li, Yu-Cheng Lee, Marcus J Calkins, Kuen-Haur Lee, Chia-Ning Yang (co-corresponding), * Pei-Jung Lu*
(2015) Landscape of Pin1 in cell cycle. Experimental Biology and Medicine 2015 Feb 7 pii: 1535370215570829 (Impact Factor 2013: 2.223)紙本檔頁碼240: 403–408

38. Ribai Yan, Hsiao-Ching Chuang, Naval Kapuriya, Chih-Chien Chou, Po-Ting Lai, Hsin-Wen Chang, Chia-Ning Yang, Samuel Kulp, Ching-Shih Chen
(2015) Exploitation of the Ability of γ-Tocopherol to Facilitate Membrane Co-localization of Akt and PHLPP1 to Develop PHLPP1-Targeted Akt Inhibitors. Accepted by Journal of Medicinal Chemistry, February 2015

39. Hung-Yin Lin, Jian-Zhou Chen, Hao-Yi Li, Chia-Ning Yang* (corresponding)
(2015) A simple three-input DNA-based system works as a full-subtractor. Accepted by Scientific Reports on April 21, 2015 (Impact Factor 2013: 5.078)

40. Chih-Hua Tseng, Cherng-Chyi Tzeng, Chih-Yao Hsu, Chih-Mei Cheng, Chia-Ning Yang, Yeh-Long Chen
(2015) Discovery of 3-phenylquinolinylchalcone derivatives as potent and selective anticancer agents against breast cancers. European Journal of Medicinal Chemistry 97 (2015) 306–319

41. I-Chung Cheng, Ya-Chun Chen, Chia-Wei Ku, Yu-Wen Huang, Chia-Ning Yang* (corresponding).
(2015) Structural and Dynamic Characterization on Mutated Keap1 for Varied Affinity toward Nrf2: A Molecular Dynamics Simulation Study. Accepted by Journal of Chemical Information and Modeling (Impact Factor 2014: 3.738), Sep 8 2015.

42. Ya-Jyun Chen, Chia-Ning Yang* (corresponding)
(2016) Molecular Modeling of Structural and Functional Variance in the SAGA Deubiquitinating Module Caused by Sgf73 Y57A Mutation. Accepted by RSC Advances on 2016/6/29 (Impact factor 2015: 3.289)

43. Chien-Cheng Lee, Yu-Chung Chuang, Yu-Lin Liu, and Chia-Ning Yang* (corresponding)
(2017) A Molecular Dynamics Simulation Study for Variant Drug Responses Due to FMS-Like Tyrosine Kinase 3 G697R Mutation Accepted by RSC Advances, on May 16, 2017 (Impact Factor 2015: 3.289)

44. Ya-Jyun Chen, Bo-Yen Huang, Chia-Ning Yang* (corresponding)
(2017) Molecular modeling on HIF-2α–ARNT dimer destabilization caused by R171A and/or V192D mutations in HIF-2α. Journal of Molecular Graphics and Modelling, 79:35-45

45. Kai-Wen Cheng, Chih-Hua Tseng, Chia-Ning Yang, Cherng-Chyi Tzeng, Ta-Chun Cheng, Yu-Lin Leu, Yu-Chung Chuang, Jaw-Yuan Wang, Yun-Chi Lu, Yeh-Long Chen, Tian-Lu Cheng*
(2017) Specific inhibition of bacterial β-glucuronidase by pyrazolo[4,3-c]quinoline derivatives via a pH-dependent manner to suppress chemotherapy-induced intestinal toxicity. Accepted by Journal of Medicinal Chemistry, on 10/28/2017 (Impact factor 2016: 6.259)

46. Mei-Hwa Lee, Hung-Yin Lin, Hsueh-Wen Chang, Chia-Ning Yang* (corresponding)
(2018) Detection of DNA Sequences with a Single-Base Mismatch on a Gold-Based and Pyrene-Assisted Platform. Sensors and Actuators B: Chemical, 266:522-527.

47. Pei-Jung Lu*, Po-Shun Wang, Cheng-Han Chou, Cheng-Han Lin, Yun-Chin Yao, Hui-Chuan Cheng, Hao-Yi Li, Luo-Ping Ger, Yu-Chia Chen, Forn-Chia Lin, Tang-Long Shen, Michael Hsiao, Chia-Ning Yang, Yu-Chung Chuang.
(2018) A novel long non-coding RNA linc-ZNF469-3 promotes lung metastasis through miR-574-5p-ZEB1 axis in triple negative breast cancer Oncogene 7, 29871-29881(impact factor 2016: 7.519), accepted on 2018/4/4.

48. Chia-Hua Chou, Ming-Chang Yang, Bo-Xiu Hsiao, Yin-Hsuan Wang, Hsin-Fu Liu, Shean-Jaw Chiou, Yu-Chung Chuang, Chia-Ning Yang, Ann-Shung Lieu, Joon-Khim Loh, Shen-Long Howng, An-Kuo Chou, Chao-Neng Tseng, Jiin-Tsuey Cheng, Yi-Ren Hong*.
(2018) The origin of GSKIP, a multifaceted regulatory factor in the mammalian Wnt pathway BBA - Molecular Cell Research (impact factor: 4.521), accepted on 2018/4/19.

49. Cheng-Han Jiang, Chong-Xian Huang, Ya-Jyun Chen, Yu-Chung Chuang, Bo-Yen Huang, Chia-Ning Yang*.
(2018)Molecular Modeling for Structural Insights Concerning the Activation Mechanisms of F1174L and R1275Q Mutations on Anaplastic Lymphoma Kinase. Molecules, 23(7):1610.

50. Mei-Hwa Lee, Ching-ChichLeu, Cheng-Chih Lin, Yu-Fan Tseng, Hung-Yin Lin*, Chia-Ning Yang*.
(2019) Gold-decorated magnetic nanoparticles modified with hairpin-shaped DNA for fluorometric discrimination of single-base mismatch DNA MicrochimicaActa (impact factor 2017: 5.705), accepted on 12/15/2018.

51. Chia-Hung Hsu, Ya-Jyun Chen, Chia-Ning Yang*.
(2019)Loss of Function in SAGA Deubiquitinating Module Caused by Sgf73 H93A Mutation: A Molecular Dynamics Study.Accepted by Journal of Molecular Graphics and Modelling on 6/2/2019 (impact factor 2017: 1.885).

52. Yu-Chung Chuang,Bo-Yen Huang,Hsin-Wen Chang, Chia-Ning Yang*
(2019)Molecular Modeling ofALK L1198F and/or G1202R Mutations to Determine Differential Crizotinib Sensitivity.Accepted by Scientific Reports on 6/18/2019. (impact factor 2017: 4.122).

53.Mei-Hwa Lee, Hung-Yin Lin, Chia-Ning Yang*
(2019) A DNA-based Dual-signal Temperature Probe Accepted by AnalyticaChimicaActa on 7/22/2019 (Impact factor 2018: 5.256)

54. Yu-Chan Chang, Jean Chiou, Yi-Fang Yang, Chia-Yi Su, Yuan-Feng Lin,Chia-Ning Yang,Pei-Jung Lu, Ming-Shyan Huang, Chih-Jen Yang and Michael Hsiao*
(2019) Therapeutic Targeting of Aldolase A Interactions Inhibits Lung Cancer Metastasis and Prolongs Survival Cancer Research, DOI: 10.1158/0008-5472.CAN-18-4080 (Impact Factor 2018: 8.378)

55. Ya-Jyun Chen, Pei-Yi Li, Chia-Ning Yang*
(2021) Molecular Dynamics Study of Enhanced Autophosphorylation by S904F Mutation of the RET Kinase Domain.Accepted by Journal of Structural Biology on 9/18/2021. (impact factor 2020: 2.867).

56. Yueh-Shih Chang, Yi-Cheng Lan, Ya-Jyun Chen, Jen-Seng Huang, Chia-Ning Yang*, Chi-Ying F. Huang *, Kun-Yun Yeh
(2022) A Novel Phenotype of the Factor 5 Gene Mutation (Homozygote Met1736Val and Heterozygote Asp68His) Is Associated with Moderate Factor V Deficiency. Frontiers in Medicine, Article 870269

57. Chia-Hung Hsu, Ya-Jyun Chen, Chia-Ning Yang*
(2022) An Order-to-disorder Structural Switch Regulates HIF-1α Transcription Activity by Phosphorylated S247 in HIF1α PAS-B Domain. Computers in Biology and Medicine (IF 2021: 6.698), volume 149, article 106006

58. Cheng-Yao Yang, Min-Yu Lee, Yeh-Long Chen, Jun-Ping Shiau, Yung-Hsiang Tsai, Chia-Ning Yang, Hsueh-Wei Chang and Chih-Hua Tseng
(2023) Synthesis and Anticancer Evaluation of 4-Anilinoquinolinylchalcone Derivatives. International Journal of Molecular Sciences (IF 2022: 5.57), volume 24(7), 6034

59. Hsuan-Hsuan Lo , Ya-Jyun Chen, Cheng-Han Jiang, Chih-Hua Tseng, Chia-Ning Yang
(2023) A Molecular Simulation Study of the Clinical G409V Mutant in PINK1 Associated with Early-onset Parkinson’s Disease. International Journal of Biological Macromolecules (IF 2023: 8.2), 254, 127566

研討會論文

1. 楊佳寧, 鄭筱萍, 林哲信
(2004) “A Microarray Assisted DNA Computing on SAT Problems.”中國化學年會,台中中興大學,November 20-21

2. 鄭筱萍, 林哲信, 楊昌彪, 楊佳寧
(2005) “Solutions to SAT Problems by Modified Sticker Model and Microarray Assisted DNA Computing.”台灣生物資訊年會,成功大學醫學院, August 8-10. (獲得壁報論文競賽第一名)

3. Hsu, C.Y.; Yang, C.B.; Huang, K.S.; Yang, C.N.
(2005) ”Minimum Finding with DNA Computing.” 數位生活與網際網路科技研討會,成功大學資訊系所.

4.Huang, Y.Y.; Yang, C.B.; Tseng, K.T.; Yang, C.N.
(2005) “Protein Folding Prediction with Genetic Algorithms.” In Proc. of the 4th Conference on Information Technology and Applications in Outlying Islands,pp.130-139,澎湖.

5.Yang, C.N.; Hsu, C.Y.; Yang, C.B.; Huang, K.S.
(2006) “Error-Tolerant Minimum Finding with DNA Computing, the 12th international meeting on DNA computing.” Seoul, Korea.

6.Cheng, H.P.; Lin, C.H.; Yang, C.B.; Yang, C.N.
(2006) “Solutions to SAT Problems by Modified Sticker Model and Microarray Assisted DNA Computing.” The 12th DNA computing conference, Seoul, Korea, June, 2006.

7.Yang, C.N.; Huang, Y.L.; Lu, P.J.
(2006) “VGHKS-698v Interacts with Microtubule Organization and Causes Mitotic Arrest Followed by Apoptosis in Hela Cells.” 20th IUBMB International Congress of Biochemistry and Molecular Biology, Kyoto, Japan, June, 2006.

8.Yang, C.N.; Chao, C.H.; Cheng, H.P.; Lin, C.H.
(2006) “A MEMS Based DNA Computer for Solving SAT Problems.” Proceedings of the 1st IEEE International Conference on Nano/Micro Engineered and Molecular Systems. 172-177, Zhuhai, China.

9.Chang, T.Y.; Lin, C.H.; Yang, C.N.; Lin, C.W.
(2007) “A Hyper-Step DNA Computing System Based On Surface Plasmon Resonance.” Proceeding of SPIE, Vol. 6465, 646505, 1-10.

10. 楊佳寧, 黃郁文, 郭勁宏
(2009) “A Molecular Dynamics Study in Determining the Pin1 WW-Pintide Complex.”中國化學年會,Dec 5-6. 高雄縣義守大學.

11. 楊佳寧, 盧怡如, 李豪嶧
(2009) “A Molecular Dynamics Study on the Role of Phosphoserine-proline Motif in Pin1 WW-CTD Complex.”中國化學年會,Dec 5-6. 高雄縣義守大學.

12. 陳俊諺, 楊佳寧, 莊祐仲
(2009) “A 3D-QSAR Study on Arylbenzothiophene Derivatives for MCF-7 Cell Inhibitory Activity and Relative Binding Affinity with Respect to E2 on ERα."中國化學年會,Dec 5-6. 高雄縣義守大學.

13. 楊佳寧, 羅振維, 莊祐仲
(2009) “A Molecular Dynamics Study of GSK3β-GSKIP and GSK3β-WWOX2 Complexes.”中國化學年會,Dec 5-6. 高雄縣義守大學.

14. 莊祐仲, 楊佳寧
(2009) “A Ligand-based CoMSIA Study on a Series of Furo[3',2':3,4]naphtho[1,2-d]imidazole Analogs.” 中國化學年會,Dec 5-6. 高雄縣義守大學.

15. Ying-Hsin Chang, Jun-Yan Chen, Chiou-Yi Hor, Yu-Chung Chuang, Chang-Biau Yang,Chia-Ning Yang.
(2011) Computational study of estrogen receptor-alpha antagonist with three-dimensional quantitative structure-activity relationship, support vector regression, and linear regression methods”, Global Breast Cancer Conference, Seoul, Korea.

16. 楊佳寧,許純瑜,莊祐仲.
(2011) Molecular beacon-based half adder and half subtractor.中國化學年會,清華大學.

17. Chia-Ning Yang, Yu-Peng Liu, Pei-Jung Lu.
(2011) “MicroRNA18 down-regulated STK4 expression and promoted cell proliferation in prostate cancer cells”, Sixteenth Annual Meeting of the RNA society, Kyoto, Japan.

18. Liu, Yu-Peng, Yang, Chia-Ning Yang, Lu, Pei-Jung.
(2012)“Cisplatin enriches drug resistant CD133 positive cells via activation of NOTCH signaling in non-small cell lung cancer”, International Society for Stem Cell Research, Yokohama, Japan.

19. 楊佳寧.
(2012) “以DNA分子信標所組成之半減法器進行邏輯運算”.中國化學年會,成功大學.

20. Chia-Ning Yang, Yu-Peng Liu, Pei-Jung Lu.
(2013)“Mst1 down regulation promotes tumor invasion/migration and is associated with poor prognosis in human colon cancer”, American Association of Cancer Research Annual Meeting 2013, Washington, D.C., USA.

21. Chia-Ning Yang, Yu-Peng Liu, Pei-Jung Lu.
(2013)“Novel small compounds targeting cancer stem cells of non-small cell lung cancer”, International Association for the Study of Lung Cancer and 15th World Conference on Lung Cancer, Sydney, Australia.

22. Chia-Ning Yang, Ya-Jyun Chen.
(2014) Molecular dynamics study on Keap1 point mutations in lung cancer, American Association for Cancer Research Annual Meeting 2014, San Diego, USA.

23. 楊佳寧,張景勛*.
(2014) A Molecular Dynamics Study on Grb7 SH2 Domain.化學年會,工研院,新竹. (2014/11/21~23)

24. 楊佳寧,莊祐仲*,張景勛.
(2014) A study on SIRT2 inhibitors using 3D-QSAR and molecular dynamics simulations.化學年會,工研院,新竹. (2014/11/21~23)

25. 楊佳寧,陳雅君*.
(2014) Structural and dynamic characterization on mutated Keap1: a molecular dynamics simulation study.化學年會,工研院,新竹. (2014/11/21~23)

26. 楊佳寧*,林宏殷,陳建州.
(2014) A Molecular Beacon-Based Full-Subtractor.化學年會,工研院,新竹. (2014/11/21~23)

27. 陳雅君,楊佳寧.
(2015) Molecular Modeling Studies of the SAGA Deubiquitinating Module Structural and Functional Variance Caused by Sgf73/Y57A. 2015年理論計算化學小組九月研討會,台灣大學化學系,台北. (2015/9/8)

28. 陳雅君,黃昱菘,林政翰,劉宏彬,楊佳寧.
(2017) Molecular modeling on HIF-2α−ARNT dimer destabilization caused by HIF-2α V192D and/or R171A mutations，2017/5/24，高雄醫學大學 105學年度跨校研究學習成效競賽暨壁報成果展 佳作獎

邀請演講

1. "DNA Computing"，第二十屆生物夏令營，台中東海大學，2004/8/18-20。

2. "A Novel Microarray-based DNA Computer for Solving SAT Problems Utilizing a Modified Sticker Model"，The 2nd International Meeting on Microsensors and Microsystems，成功大學，2006/1/17。

3. "Structural and Dynamic Characterization on Mutated Keap1 for Varied Affinity toward Nrf2"，第六屆海峽兩岸理論與計算化學會議，國立中正大學，2015/1/27。

4. "Molecular modeling studies of SIRT2 inhibitors"，2015年有機藥物研討會，國立高雄師範大學化學系，2015/5/7。

5. "Molecular Modeling Studies on Protein Allostery and Conformational Dynamics"，Workshop on Mathematical Modeling and Simulation of Electrolytes with Application to Molecular Physiology，國立台灣大學數學系/國家理論科學研究中心，2017/1/10。

6. "Protein Allosteric Modulation on Conformational Dynamics"，Winter Meeting of Theoretical/Computational Chemistry，高雄醫學大學，2018/1/31。